PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g014160.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 804aa    MW: 87995.2 Da    PI: 7.8896
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g014160.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.45.4e-18301395193
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+k+l+ sd+++ grlvlpk +ae++   +++ e++ l+++d +g++W+++++y  +++s++yvl+ G     ++  L++gD+v+F++++  +++
  Csa20g014160.1 301 FEKTLSASDAGRIGRLVLPKACAEAYfpPISQSEGIPLKIQDVKGKEWTFQFRYwpNNNSRMYVLE-GVTPCIQSMLLQAGDTVTFSRVE-PGGK 393
                     99**************************666678889*****************89999999***9.********************665.5555 PP

                     .E CS
              B3  92 lv 93 
                     l 
  Csa20g014160.1 394 LI 395
                     54 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.6E-29298408IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.66E-19298401IPR015300DNA-binding pseudobarrel domain
CDDcd100171.24E-23299396No hitNo description
PfamPF023622.8E-15301395IPR003340B3 DNA binding domain
SMARTSM010191.1E-21301401IPR003340B3 DNA binding domain
PROSITE profilePS5086310.489301402IPR003340B3 DNA binding domain
PROSITE profilePS5105013.203554604IPR011124Zinc finger, CW-type
PfamPF074963.4E-8560601IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 804 aa     Download sequence    Send to blast
MFEVKMGSKM CMNASCGTTS TVEWKKGWPL RSGLLADLCY RCGSAYESSL FCEQFHKDQS  60
GWRECYLCSK RLHCGCIASK VMIELMDYGG VGCSTCASCH QLNLNKRGEN PGVFSRMPMK  120
ALADRQHVNG ESGMNIEGGR NEADLFSQAH RGEAQPLVMG GDKREEFMPH RGFGNTSTGY  180
RLDGAEMHES SPSQPSLNMG LSVLPYSPSF STEGIEGKKH IGASSQSNVV HCSASNILHK  240
PSKPAMSTPP VGSKSAQARI GRPPVEGRGK GHLLPRYWPK YTDKEVQQIS GNLNLNIVPL  300
FEKTLSASDA GRIGRLVLPK ACAEAYFPPI SQSEGIPLKI QDVKGKEWTF QFRYWPNNNS  360
RMYVLEGVTP CIQSMLLQAG DTVTFSRVEP GGKLIMGSRK SANGGDTQGC GVTNGTSTED  420
TSSSGVTENP PSINGSSGPS LIPKESNGVP ENLSSPYGGS SSTKNENNGG RIGDDPTRVK  480
EKKRTRTIGA KNKRLLLHSE ESMELKLTWE EAQDLLRPAP SAKPTIVVVE EHEIEEFDEP  540
PVFGKRTIVT TTPTGEQERW ASCDDCSKWR RLPINALLPF KWTCIDNVWD VSRCSCSTPE  600
ESLKELENVL KAGREYKKRR TGESQAVKSE QEQSGLDALA SAAVLGDTIG EPEVATTTRH  660
PRHRAGCSCI VCIQPPSGKG RHKPNCGCNV CSTVKRRFKT LMMRRKKKLL ERDGPAAEEK  720
EKDMEQAESD KSKAEKEANT ARIDLNSDPY SKEDVEAVAV EKDGSRKRKI GESSGEAQDG  780
DGLGVKELEE EAEKIREDPR RSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-1630041513130DNA-binding protein RAV1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1694706KRRFKTLMMRRKK
2703708RRKKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010491642.10.0PREDICTED: B3 domain-containing transcription repressor VAL1-like
SwissprotQ8W4L50.0VAL1_ARATH; B3 domain-containing transcription repressor VAL1
TrEMBLR0HB220.0R0HB22_9BRAS; Uncharacterized protein
STRINGscaffold_401535.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69232440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.10.0high-level expression of sugar-inducible gene 2